Trans-eQTLs across different cancer types
In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
Gene symbol
|
Gene position (hg19)
|
p-valule
|
|||
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs6006462 | chr22:44344776 | A/C | HIC2 | chr22:21771693-21805752:+ | -0.51 | -7.09 | 4.98E-12 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | HMGXB4 | chr22:35653445-35691800:+ | -0.5 | -8.67 | 6.53E-17 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | HPS4 | chr22:26839389-26879803:- | -0.84 | -9.83 | 7.01E-21 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | HSCB | chr22:29138019-29153503:+ | -0.78 | -10.57 | 1.35E-23 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | IFT27 | chr22:37154246-37172300:- | -0.47 | -6.17 | 1.44E-9 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | INPP5J | chr22:31518717-31530682:+ | -0.45 | -6.96 | 1.16E-11 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | KCNJ2 | chr17:68164814-68176189:+ | -0.5 | -6.49 | 2.1E-10 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | KLHL22 | chr22:20795806-20850170:- | -0.88 | -10.93 | 5.75E-25 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | L3MBTL2 | chr22:41601209-41627275:+ | -1.04 | -11.09 | 1.35E-25 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | LMF2 | chr22:50941378-50946120:- | -0.69 | -8.95 | 8.08E-18 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | LOC100271722 | chr22:46435789-46440748:- | -0.51 | -6.24 | 9.63E-10 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | LOC150381 | chr22:46449726-46454400:+ | -0.69 | -9.07 | 3.18E-18 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | LOC284900 | chr22:28315364-28404267:+ | -0.54 | -7.76 | 5.33E-14 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | LOC646851 | chr22:38974125-39052634:- | -0.49 | -7.05 | 6.17E-12 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | LRP5L | chr22:25747385-25801344:- | -0.41 | -5.94 | 5.58E-9 | Box Plot |